Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_1009Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171. (229 aa)    
Predicted Functional Partners:
CYA_1008
Hypothetical protein; Identified by Glimmer2; putative.
       0.741
CYA_0791
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.700
CYA_0010
Identified by match to protein family HMM PF00903.
  
     0.653
CYA_1723
Conserved hypothetical protein; Identified by similarity to GB:BAC10028.1.
  
     0.629
CYA_0666
Conserved hypothetical protein; Identified by similarity to GB:BAC90862.1.
  
     0.617
CYA_0683
Conserved hypothetical protein; Identified by similarity to GB:BAC90862.1.
  
     0.604
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.578
CYA_0415
Conserved hypothetical protein; Catalyzes the decarbonylation of fatty aldehydes to alkanes.
  
     0.516
CYA_2517
Conserved hypothetical protein.
  
     0.482
CYA_0080
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.477
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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