STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1022Leucine rich repeat protein; Identified by match to protein family HMM PF00560. (296 aa)    
Predicted Functional Partners:
CYA_2656
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
 
  
 0.625
petE
Plastocyanin; Identified by similarity to SP:Q51883; match to protein family HMM PF00127; match to protein family HMM TIGR02656.
   
   0.599
CYA_1023
Conserved hypothetical protein; Identified by similarity to GB:BAD80637.1; Belongs to the UPF0367 family.
       0.535
CYA_2333
Protein kinase domain/TPR repeat protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.502
CYA_1436
Peptidase, M8 (leishmanolysin) family.
  
  
 0.488
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
  
  
 0.488
CYA_0117
Identified by match to protein family HMM PF03372.
     
 0.484
CYA_1024
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.464
CYA_1021
Hypothetical protein; Identified by Glimmer2; putative.
       0.456
CYA_0588
WD40-like beta propeller repeat protein; Identified by match to protein family HMM PF07676.
   
   0.427
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.