Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CYA_0208 | CYA_0939 | CYA_0208 | CYA_0939 | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | 0.562 |
| CYA_0208 | CYA_0961 | CYA_0208 | CYA_0961 | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family. | 0.715 |
| CYA_0208 | CYA_1072 | CYA_0208 | CYA_1072 | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | 0.819 |
| CYA_0208 | mraY | CYA_0208 | CYA_1982 | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.567 |
| CYA_0208 | murA | CYA_0208 | CYA_1988 | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.630 |
| CYA_0208 | murC | CYA_0208 | CYA_1876 | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.776 |
| CYA_0208 | murE | CYA_0208 | CYA_0196 | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.525 |
| CYA_0208 | murF | CYA_0208 | CYA_0077 | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.572 |
| CYA_0208 | rodA | CYA_0208 | CYA_2890 | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Putative rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.632 |
| CYA_0939 | CYA_0208 | CYA_0939 | CYA_0208 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | 0.562 |
| CYA_0939 | CYA_0961 | CYA_0939 | CYA_0961 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family. | 0.925 |
| CYA_0939 | CYA_1072 | CYA_0939 | CYA_1072 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | 0.921 |
| CYA_0939 | CYA_1608 | CYA_0939 | CYA_1608 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | Conserved hypothetical protein. | 0.834 |
| CYA_0939 | mraY | CYA_0939 | CYA_1982 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.438 |
| CYA_0939 | murA | CYA_0939 | CYA_1988 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.487 |
| CYA_0939 | murC | CYA_0939 | CYA_1876 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.600 |
| CYA_0939 | murE | CYA_0939 | CYA_0196 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.724 |
| CYA_0939 | murF | CYA_0939 | CYA_0077 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.619 |
| CYA_0939 | rodA | CYA_0939 | CYA_2890 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | Putative rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.967 |
| CYA_0961 | CYA_0208 | CYA_0961 | CYA_0208 | Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family. | Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | 0.715 |
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