Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_1075Conserved hypothetical protein; Identified by similarity to GB:BAD79760.1. (149 aa)    
Predicted Functional Partners:
CYA_1076
Identified by similarity to SP:P39144; match to protein family HMM PF01648; Belongs to the P-Pant transferase superfamily.
       0.636
CYA_1074
HDIG domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277.
       0.578
CYA_0797
Conserved hypothetical protein.
  
     0.566
CYA_0814
Conserved domain protein.
  
     0.534
CYA_2157
Conserved domain protein; Identified by similarity to PIR:S76707.
  
     0.522
CYA_0552
Putative lipoprotein.
  
     0.514
CYA_1062
HupE/UreJ family protein; Identified by similarity to SP:P27650; match to protein family HMM PF04955.
  
     0.494
ndhL
Hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.480
CYA_1073
Glycosyl transferase, group 2; Identified by match to protein family HMM PF00535; match to protein family HMM PF04138.
 
    0.471
crm2-1
CRISPR-associated protein, Crm2 family; Identified by match to protein family HMM TIGR01872; match to protein family HMM TIGR02577.
  
     0.470
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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