Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_1102Identified by match to protein family HMM PF01124. (152 aa)    
Predicted Functional Partners:
CYA_1109
Conserved domain protein; Identified by match to protein family HMM PF07602.
 
     0.761
CYA_1713
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.651
CYA_1104
Arsenite-antimonite (ArsAB) efflux family transporter, ATP-binding protein; Identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345.
       0.572
CYA_1107
Putative iron-sulfur cluster-binding protein; Identified by similarity to SP:P07324; match to protein family HMM PF07845.
 
     0.563
CYA_1814
Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.
  
     0.560
CYA_1851
Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.
  
     0.560
CYA_0040
Conserved hypothetical protein.
  
     0.542
CYA_2565
Conserved hypothetical protein.
  
     0.533
CYA_1105
Putative membrane protein.
       0.507
CYA_1106
Putative iron-sulfur cluster-binding protein; Identified by similarity to SP:P07324.
       0.507
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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