Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_1104Arsenite-antimonite (ArsAB) efflux family transporter, ATP-binding protein; Identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345. (684 aa)    
Predicted Functional Partners:
CYA_2683
ATPase, arsenite-antimonite (ArsAB) efflux family; Identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345.
  
  
 
0.926
CYA_1230
Gas vesicle protein, GvpL/GvpF family; Identified by similarity to SP:P55149; match to protein family HMM PF06386.
 
     0.733
gvpG
Gas vesicle protein G; Identified by match to protein family HMM PF05120.
 
     0.692
gvpN
Gas vesicle protein GvpN; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR02640.
  
     0.689
gvpA
Gas vesicle protein A; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
     0.685
gvpW
Gas vesicle protein W; Identified by similarity to GB:CAE11909.1.
 
     0.680
gvpJ
Gas vesicle protein J; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
     0.678
CYA_1105
Putative membrane protein.
       0.678
CYA_1106
Putative iron-sulfur cluster-binding protein; Identified by similarity to SP:P07324.
       0.678
CYA_1107
Putative iron-sulfur cluster-binding protein; Identified by similarity to SP:P07324; match to protein family HMM PF07845.
       0.678
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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