STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1107Putative iron-sulfur cluster-binding protein; Identified by similarity to SP:P07324; match to protein family HMM PF07845. (138 aa)    
Predicted Functional Partners:
CYA_1105
Putative membrane protein.
       0.791
CYA_1106
Putative iron-sulfur cluster-binding protein; Identified by similarity to SP:P07324.
       0.773
CYA_1104
Arsenite-antimonite (ArsAB) efflux family transporter, ATP-binding protein; Identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345.
       0.678
CYA_1102
Identified by match to protein family HMM PF01124.
 
     0.563
CYA_1108
Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
       0.560
CYA_0598
Conserved domain protein.
  
     0.555
CYA_2692
FHA domain protein; Identified by match to protein family HMM PF00498.
  
     0.489
cpcD
Phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P31966; match to protein family HMM PF01383.
  
     0.476
CYA_2211
Conserved hypothetical protein.
  
     0.472
CYA_2690
FHA domain protein; Identified by match to protein family HMM PF00498.
  
     0.471
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.