Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_1108Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (647 aa)    
Predicted Functional Partners:
CYA_1106
Putative iron-sulfur cluster-binding protein; Identified by similarity to SP:P07324.
 
     0.774
CYA_2030
TonB family protein; Identified by similarity to GB:AAF04082.1; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 
 0.753
CYA_1245
Identified by match to protein family HMM TIGR01352.
 
 
 
 0.676
CYA_1107
Putative iron-sulfur cluster-binding protein; Identified by similarity to SP:P07324; match to protein family HMM PF07845.
       0.560
CYA_2815
Proton transporter, MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618.
 
   
 0.551
CYA_1455
Conserved hypothetical protein; Identified by similarity to GB:BAC90967.1.
 
 
   0.533
CYA_1105
Putative membrane protein.
       0.531
CYA_1111
Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
 
     0.516
CYA_2029
Iron chelate ABC transporter (FeCT) family, substrate-binding protein; Identified by match to protein family HMM PF01497.
 
   
 0.511
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.501
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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