Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CYA_1126ISSoc4, transposase orfA; Identified by similarity to PIR:AD2038. (132 aa)    
Predicted Functional Partners:
CYA_1127
ISSoc4, transposase orfB; Identified by similarity to GB:AAC97587.1.
 
    0.920
CYA_2081
ISSoc4, transposase orfB; Identified by similarity to GB:AAC97587.1.
  
    0.705
CYA_0038
ISSoc4, transposase orfB; Identified by similarity to PIR:AI1851.
  
    0.702
CYA_2637
ISSoc4, transposase orfB; Identified by similarity to GB:AAC97587.1.
  
    0.668
CYA_0998
ISSoc4, transposase orfB; Identified by similarity to GB:AAC97587.1.
  
    0.665
CYA_2710
ISSoc4, transposase orfB; Identified by similarity to GB:AAC97587.1.
  
    0.665
CYA_1289
ISSoc4, transposase orfB; Identified by similarity to GB:AAC97588.1.
  
    0.659
CYA_1360
ISSoc4, transposase orfB; Identified by similarity to PIR:AI1851.
  
    0.659
CYA_1662
ISSoc4, transposase orfB; Identified by similarity to GB:AAC97588.1.
  
    0.659
CYA_2846
ISSoc4, transposase orfB; Identified by similarity to PIR:AI1851.
  
    0.647
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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