node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CYA_0291 | CYA_1213 | CYA_0291 | CYA_1213 | RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | 0.570 |
CYA_0291 | infB | CYA_0291 | CYA_2338 | RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.465 |
CYA_0702 | CYA_1213 | CYA_0702 | CYA_1213 | Identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | 0.553 |
CYA_0702 | CYA_2135 | CYA_0702 | CYA_2135 | Identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family. | 0.420 |
CYA_0702 | infB | CYA_0702 | CYA_2338 | Identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.434 |
CYA_1093 | CYA_1213 | CYA_1093 | CYA_1213 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | 0.515 |
CYA_1113 | CYA_1213 | CYA_1113 | CYA_1213 | Identified by match to protein family HMM PF01612. | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | 0.814 |
CYA_1113 | ksgA | CYA_1113 | CYA_0917 | Identified by match to protein family HMM PF01612. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.578 |
CYA_1113 | rph | CYA_1113 | CYA_2643 | Identified by match to protein family HMM PF01612. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.994 |
CYA_1212 | CYA_1213 | CYA_1212 | CYA_1213 | Phosphate uptake transporter (PhoT) ABC transporter family, substrate-binding protein; Identified by similarity to SP:P39665. | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | 0.538 |
CYA_1213 | CYA_0291 | CYA_1213 | CYA_0291 | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.570 |
CYA_1213 | CYA_0702 | CYA_1213 | CYA_0702 | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | Identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.553 |
CYA_1213 | CYA_1093 | CYA_1213 | CYA_1093 | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.515 |
CYA_1213 | CYA_1113 | CYA_1213 | CYA_1113 | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | Identified by match to protein family HMM PF01612. | 0.814 |
CYA_1213 | CYA_1212 | CYA_1213 | CYA_1212 | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | Phosphate uptake transporter (PhoT) ABC transporter family, substrate-binding protein; Identified by similarity to SP:P39665. | 0.538 |
CYA_1213 | CYA_1863 | CYA_1213 | CYA_1863 | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | Identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.553 |
CYA_1213 | CYA_2135 | CYA_1213 | CYA_2135 | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family. | 0.730 |
CYA_1213 | infB | CYA_1213 | CYA_2338 | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.423 |
CYA_1213 | ksgA | CYA_1213 | CYA_0917 | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.472 |
CYA_1213 | rph | CYA_1213 | CYA_2643 | Exoribonuclease, VacB/RNB family; Identified by match to protein family HMM PF00773. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.923 |