STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1237Polyamine ABC transporter, polyamine-binding protein; Identified by similarity to SP:P23861; match to protein family HMM TIGR01409. (374 aa)    
Predicted Functional Partners:
potC
Spermidine/putrescine ABC transporter, permease protein PotC; Identified by similarity to SP:P23859; match to protein family HMM PF00528.
  
 0.950
potB
Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528.
 
  
 0.948
potA
Spermidine/putrescine ABC transporter, ATP-binding protein; Identified by similarity to SP:P23858; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
  
 0.907
CYA_1236
Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
    0.774
CYA_2794
Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
  
 0.722
CYA_1235
Putative lipoprotein.
       0.645
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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