Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1241Conserved hypothetical protein. (459 aa)    
Predicted Functional Partners:
CYA_0754
Conserved hypothetical protein.
  
     0.750
CYA_2132
Putative membrane protein.
  
     0.737
CYA_1993
Conserved hypothetical protein.
  
     0.724
CYA_2047
Conserved hypothetical protein.
  
     0.688
CYA_1572
Conserved hypothetical protein.
  
     0.675
CYA_1793
Conserved hypothetical protein.
  
     0.671
CYA_0797
Conserved hypothetical protein.
  
     0.664
CYA_1608
Conserved hypothetical protein.
 
 
 
 0.651
CYA_0290
Conserved hypothetical protein; Identified by similarity to GB:BAD80164.1.
 
     0.649
CYA_1986
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.637
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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