Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CYA_1245Identified by match to protein family HMM TIGR01352. (363 aa)    
Predicted Functional Partners:
CYA_2816
Proton transporter, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
  
 
 0.891
CYA_2031
Transporter, TonB-dependent heme/hemoglobin receptor family; Identified by similarity to GB:AAC27029.1; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786.
  
 
 0.879
CYA_2815
Proton transporter, MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618.
 
 
 0.825
CYA_1108
Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 
 0.676
CYA_1455
Conserved hypothetical protein; Identified by similarity to GB:BAC90967.1.
 
    0.627
nifU
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.578
CYA_1022
Leucine rich repeat protein; Identified by match to protein family HMM PF00560.
  
  
 0.490
CYA_1246
Identified by match to protein family HMM PF00903.
       0.444
CYA_2431
S-layer domain protein.
  
   
 0.441
CYA_1247
Conserved hypothetical protein; Identified by match to protein family HMM PF06485.
       0.420
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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