Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
petHferredoxin--NADP reductase; Identified by similarity to SP:P00454; match to protein family HMM PF00175. (296 aa)    
Predicted Functional Partners:
CYA_1426
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
  
 
 0.994
CYA_0027
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
  
 
 0.971
CYA_0289
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
  
 
 0.971
petJ
Cytochrome c6; Identified by similarity to SP:P28596; match to protein family HMM PF00034.
     
 0.953
CYA_1840
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
  
 
 0.943
petE
Plastocyanin; Identified by similarity to SP:Q51883; match to protein family HMM PF00127; match to protein family HMM TIGR02656.
     
 0.935
narB
Nitrate reductase; Identified by similarity to SP:P73448; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
    
 0.897
cpcA-1
Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.
  
 
 
 0.847
cpcA-2
Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.
  
 
 
 0.845
cpcB-2
Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.
  
 
   0.833
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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