STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1285Polar amino amino acid ABC transporter (PAAT) family, ATP-binding protein; Identified by similarity to SP:Q52815; match to protein family HMM PF00005. (262 aa)    
Predicted Functional Partners:
CYA_1282
Polar amino amino acid ABC transporter (PAAT) family, permease protein; Identified by similarity to SP:Q52814; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 0.994
CYA_1284
Polar amino amino acid ABC transporter (PAAT) family, amino acid-binding protein; Identified by similarity to SP:Q52812; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 
 0.981
CYA_0686
Cystine ABC transporter, permease protein; Identified by similarity to SP:P42200; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 0.976
CYA_1283
Polar amino amino acid ABC transporter (PAAT) family, permease protein; Identified by similarity to SP:Q52813; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.975
CYA_0685
Cystine ABC transporter, cystine-binding protein; Identified by similarity to SP:P39174; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.837
CYA_2814
Amino acid transporter, amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.827
macB
Macrolide ABC transporter, permease protein; Identified by similarity to SP:P75831; match to protein family HMM PF02687.
 
      0.823
CYA_2674
Polar amino acid ABC transporter (PAAT) family, amino acid-binding protein; Identified by similarity to SP:P02911; match to protein family HMM PF00497.
 
 
 0.789
gltS
Ferredoxin-dependent glutamate synthase; Identified by similarity to SP:P55038; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
  
  
 0.579
CYA_2510
Transporter, solute:sodium symporter (SSS) family; Identified by similarity to SP:P16256; match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.475
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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