Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_1355Conserved hypothetical protein; Identified by similarity to PIR:S77467. (96 aa)    
Predicted Functional Partners:
CYA_1190
Conserved hypothetical protein.
  
     0.759
CYA_2377
Conserved hypothetical protein; Identified by similarity to PIR:AH2287.
  
     0.736
CYA_1397
Conserved hypothetical protein.
  
     0.699
CYA_1184
Conserved domain protein.
  
     0.693
CYA_1986
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.683
CYA_0973
Conserved hypothetical protein; Identified by match to protein family HMM PF04286.
  
     0.674
CYA_0503
Conserved hypothetical protein; Identified by similarity to GB:BAC91438.1.
  
     0.670
CYA_1317
Conserved hypothetical protein.
  
     0.666
CYA_2120
ATP synthase protein I; Identified by similarity to SP:P12403.
  
     0.663
CYA_0426
Conserved hypothetical protein.
  
     0.657
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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