Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_1367Conserved hypothetical protein. (163 aa)    
Predicted Functional Partners:
CYA_0266
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02450.
  
     0.771
CYA_2204
Conserved hypothetical protein.
  
     0.768
pcyA
Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.
  
     0.761
CYA_1037
Putative membrane protein; Identified by similarity to PIR:AD2406.
  
     0.747
CYA_2335
Conserved hypothetical protein; Identified by similarity to PIR:AF2318.
  
     0.734
CYA_2399
Conserved hypothetical protein; Identified by similarity to GB:BAD78649.1.
  
     0.726
CYA_0454
Identified by match to protein family HMM TIGR02652.
  
     0.711
CYA_1939
Conserved hypothetical protein.
  
     0.710
CYA_1833
Identified by match to protein family HMM PF06967.
  
     0.692
CYA_0562
Identified by match to protein family HMM PF00903.
  
     0.686
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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