Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CYA_1391Conserved hypothetical protein; Identified by similarity to GB:BAC07925.1. (66 aa)    
Predicted Functional Partners:
CYA_2650
Tetratricopeptide repeat protein.
  
     0.754
CYA_0748
Conserved hypothetical protein.
  
     0.733
CYA_0040
Conserved hypothetical protein.
  
     0.729
ndhO
Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.711
CYA_1832
Conserved hypothetical protein.
  
     0.707
CYA_1341
Conserved hypothetical protein.
  
     0.705
CYA_0231
Conserved hypothetical protein; Identified by similarity to GB:BAC89072.1.
  
     0.696
CYA_0503
Conserved hypothetical protein; Identified by similarity to GB:BAC91438.1.
  
     0.696
CYA_0965
Conserved hypothetical protein.
  
     0.695
CYA_1984
Conserved domain protein; Identified by similarity to PIR:AH2164.
  
     0.693
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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