Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_1441Carbohydrate uptake ABC transporter-1 (CUT1) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (373 aa)    
Predicted Functional Partners:
upgA
Glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10905; match to protein family HMM PF00528.
 
 
 0.996
CYA_1370
Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10906; match to protein family HMM PF00528.
 
 0.992
ugpB
Glycerol-3-phosphate ABC transporter, glycerol-3-phosphate binding protein; Identified by similarity to SP:P10904; match to protein family HMM PF01547; match to protein family HMM TIGR01409.
 
 
 0.989
CYA_0152
Peptide/opine/nickel uptake ABC transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.620
CYA_2783
Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.
 
   
 0.617
queG
Putative iron-sulfur cluster binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.
      
 0.555
CYA_1440
ISSoc14, transposase, truncation.
       0.543
CYA_1442
Small heat shock protein (HSP20) family protein; Identified by similarity to SP:Q06823; match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.
   
   0.492
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.475
potC
Spermidine/putrescine ABC transporter, permease protein PotC; Identified by similarity to SP:P23859; match to protein family HMM PF00528.
 
   
 0.452
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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