Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_1489Conserved hypothetical protein; Identified by similarity to GB:BAC89679.1. (167 aa)    
Predicted Functional Partners:
CYA_1490
RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.864
CYA_1571
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266.
  
    0.797
CYA_1184
Conserved domain protein.
  
     0.769
CYA_2047
Conserved hypothetical protein.
  
     0.766
CYA_2480
Putative lipoprotein.
  
     0.765
CYA_0119
Conserved hypothetical protein; Identified by similarity to GB:BAC88346.1.
  
     0.757
CYA_2301
Conserved hypothetical protein.
  
     0.756
CYA_2228
Conserved domain protein.
  
     0.755
CYA_1986
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.753
CYA_2795
Chloroplast envelope protein translocase (CEPT or Tic-Toc) family protein; Identified by match to protein family HMM PF04278.
  
     0.750
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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