Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
CYA_1532Putative membrane protein; Identified by match to protein family HMM PF04240. (291 aa)    
Predicted Functional Partners:
CYA_0955
Glycosyl transferase, group 2; Identified by match to protein family HMM PF00535.
 
     0.807
CYA_2497
Identified by match to protein family HMM PF00582.
  
     0.688
CYA_0569
Conserved domain protein.
  
     0.680
CYA_0497
Conserved hypothetical protein.
  
     0.675
CYA_0089
Conserved hypothetical protein; Identified by similarity to GB:BAC92187.1.
  
     0.673
CYA_1814
Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.
  
     0.644
CYA_1851
Putative phycobilisome 120 kDa linker polypeptide, core; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.
  
     0.641
CYA_0723
Conserved hypothetical protein.
  
     0.617
CYA_0676
Conserved hypothetical protein; Identified by similarity to PIR:AG2305.
  
     0.603
CYA_0104
Conserved hypothetical protein.
  
     0.600
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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