Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_1545Mce related protein; Identified by match to protein family HMM PF02470. (408 aa)    
Predicted Functional Partners:
CYA_2087
Conserved hypothetical protein; Identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; Belongs to the MlaE permease family.
 
 0.995
CYA_0554
Membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
    0.669
glmS
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.570
CYA_0901
Conserved hypothetical protein; Identified by similarity to PIR:AE1864; match to protein family HMM PF04357.
 
   
 0.561
CYA_0902
Identified by match to protein family HMM PF01740.
  
 
 0.532
CYA_0954
Identified by match to protein family HMM PF01740.
  
 
 0.532
CYA_2105
Anti-anti-sigma factor; Identified by similarity to SP:Q9WVX8; match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.532
CYA_1518
Outer membrane efflux family protein; Identified by match to protein family HMM PF02321.
 
   
 0.523
CYA_2509
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.494
CYA_0920
Conserved hypothetical protein; Identified by similarity to PIR:AB2462.
  
     0.485
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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