Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_1579Hypothetical protein; Identified by Glimmer2; putative. (143 aa)    
Predicted Functional Partners:
CYA_2548
CRISPR-associated protein, TM1812 family; Identified by match to protein family HMM TIGR02221; match to protein family HMM TIGR02549.
  
     0.664
CYA_1578
Hypothetical protein; Identified by Glimmer2; putative.
       0.615
CYA_0871
Putative CRISPR-associated protein, APE2256 family; Identified by match to protein family HMM TIGR02619.
  
     0.598
hflX
GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
       0.506
CYA_1580
Hypothetical protein; Identified by Glimmer2; putative.
       0.476
CYA_0123
Phycobilisome degradation family protein.
  
     0.428
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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