Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1595CO2 hydration protein; Identified by match to protein family HMM TIGR01964. (419 aa)    
Predicted Functional Partners:
CYA_1593
NAD(P)H dehydrogenase, subunit NdhF3 family; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01960.
 
 
 
 0.912
CYA_1594
NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.
   
 
 0.854
ndhO
Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
 
   0.827
ccmM
Carbon dioxide concentrating mechanism protein CcmM; Identified by similarity to SP:Q03513.
  
   
 0.788
CYA_0162
Conserved hypothetical protein; Identified by similarity to PIR:AB2066.
  
     0.774
CYA_0748
Conserved hypothetical protein.
  
     0.774
CYA_0867
Conserved hypothetical protein; Identified by similarity to GB:BAC10003.1.
  
     0.774
CYA_0898
Identified by match to protein family HMM PF06967.
  
     0.774
CYA_0965
Conserved hypothetical protein.
  
     0.774
CYA_1833
Identified by match to protein family HMM PF06967.
  
     0.774
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.