STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1609Putative cobalt ABC transporter (CoT) family, ATP-binding protein; Identified by match to protein family HMM PF00005. (241 aa)    
Predicted Functional Partners:
cbiQ
Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.
 
 0.990
CYA_2321
Putative cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.
 
 0.975
CYA_0152
Peptide/opine/nickel uptake ABC transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
    
0.866
CYA_1495
Putative transporter; Identified by match to protein family HMM PF02361.
 
 
 0.821
CYA_1608
Conserved hypothetical protein.
  
    0.706
CYA_2320
Conserved hypothetical protein.
 
   
 0.624
cbiG/cobJ-1
cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466; match to protein family HMM TIGR02467.
 
  
 0.616
cbiG/cobJ-2
cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.
 
  
 0.616
CYA_2767
Identified by match to protein family HMM PF02632.
   
 
 0.614
CYA_2319
Conserved hypothetical protein; Identified by similarity to GB:BAC08972.1.
 
   
 0.613
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.