Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CYA_1615Conserved hypothetical protein. (229 aa)    
Predicted Functional Partners:
ccmM
Carbon dioxide concentrating mechanism protein CcmM; Identified by similarity to SP:Q03513.
 
 
 
 0.993
CYA_1616
Identified by match to protein family HMM PF00936.
   
 
 0.880
rbcX
Chaperon-like protein RbcX; Identified by match to protein family HMM PF02341.
  
   
 0.847
ccmL
Carbon dioxide concentrating mechanism protein CcmL; Identified by similarity to SP:P72759; match to protein family HMM PF03319.
   
 
 0.804
ccmK-2
Carbon dioxide concentrating mechanism protein CcmK; Identified by similarity to SP:Q03511; match to protein family HMM PF00936.
   
 
 0.799
CYA_1608
Conserved hypothetical protein.
 
     0.779
CYA_0454
Identified by match to protein family HMM TIGR02652.
 
     0.774
CYA_0898
Identified by match to protein family HMM PF06967.
  
     0.773
CYA_1833
Identified by match to protein family HMM PF06967.
  
     0.773
CYA_0570
Conserved hypothetical protein; Identified by similarity to GB:BAC09020.1.
  
     0.772
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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