Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_1627Peptidase, M23B family; Identified by match to protein family HMM PF01551. (392 aa)    
Predicted Functional Partners:
CYA_0154
Putative permease; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.734
CYA_1228
Putative S-layer protein; Identified by match to protein family HMM PF00395.
  
     0.603
ftsE
Cell division ATP-binding protein FtsE; Identified by similarity to SP:P10115; match to protein family HMM PF00005; match to protein family HMM TIGR02673.
 
   
 0.565
CYA_2856
Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
  
   
 0.560
CYA_0208
Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
 
   
 0.533
CYA_2854
Polysaccharide pyruvyl transferase; Identified by match to protein family HMM PF04230.
  
     0.523
CYA_0975
Putative S-layer protein; Identified by match to protein family HMM PF00395.
  
    0.515
pnpA
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.506
CYA_2753
SpoIID/LytB domain protein; Identified by match to protein family HMM TIGR02669.
 
   
 0.475
CYA_1895
Peptidase, M23B family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.
 
   
0.442
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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