Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_1629Low molecular weight phosphotyrosine protein phosphatase family protein; Identified by match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (166 aa)    
Predicted Functional Partners:
CYA_2863
Identified by match to protein family HMM PF01636; match to protein family HMM PF03881; Belongs to the fructosamine kinase family.
     0.778
CYA_0239
Bacterial sugar transferase family protein; Identified by match to protein family HMM PF02397.
  
  
 0.720
CYA_1717
Transporter, arsenical resistance-3 (ACR3) family; Identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832.
  
  
 0.686
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00085; match to protein family HMM PF07992; match to protein family HMM TIGR01292.
  
 
 0.666
CYA_1393
TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
     
 0.578
CYA_1628
Conserved hypothetical protein; Identified by similarity to GB:BAC90997.1.
       0.523
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.460
CYA_1316
DNA internalization competence protein, ComEC/Rec2 family; Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
 
     0.454
pyk
Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.
  
 
 0.454
trx-1
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
  
 
 0.439
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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