STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1680Cation ABC transporter, cation-binding protein; Identified by similarity to SP:P31305; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. (311 aa)    
Predicted Functional Partners:
CYA_1679
Manganese/zinc/iron chelate ABC transporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.997
CYA_1678
Manganese/zinc/iron chelate ABC transporter (MZT) family, permease protein; Identified by similarity to GB:AAD56938.1; match to protein family HMM PF00950.
  
 0.992
CYA_2529
Manganese/zinc/iron chelate ABC transporter (MZT) family, permease protein; Identified by similarity to SP:P39832; match to protein family HMM PF00950.
  
 0.945
CYA_2531
Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by similarity to SP:Q55281; match to protein family HMM PF00005.
 
  
 0.919
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.566
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.503
rpmB
Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.487
CYA_1669
Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.
  
  
 0.445
cobW
Cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475.
  
  
 0.445
CYA_2566
Putative cobalamin biosynthesis protein CobW; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.
  
  
 0.445
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.