Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1695Putative membrane protein. (482 aa)    
Predicted Functional Partners:
CYA_1498
Conserved hypothetical protein.
  
     0.672
CYA_0197
Putative pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
     0.659
CYA_0445
Conserved hypothetical protein.
  
     0.651
CYA_0934
Conserved hypothetical protein; Identified by similarity to PIR:AI2367.
  
     0.642
CYA_1080
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF07719.
  
     0.635
CYA_1572
Conserved hypothetical protein.
  
     0.603
CYA_1400
Conserved hypothetical protein.
  
     0.592
CYA_2491
Conserved hypothetical protein.
  
     0.549
CYA_2496
Conserved hypothetical protein.
  
     0.534
CYA_0942
Conserved hypothetical protein; Identified by similarity to PIR:AH2253.
  
     0.525
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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