Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1752Conserved hypothetical protein. (93 aa)    
Predicted Functional Partners:
CYA_1754
Conserved hypothetical protein.
 
 
 0.998
CYA_1750
Transporter, cation:proton antiporter family; Identified by match to protein family HMM PF04039.
 
 
 0.996
CYA_1755
Identified by match to protein family HMM PF00361.
 
 
 0.996
CYA_1756
NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4L family; Identified by match to protein family HMM PF00420.
 
 
 0.995
CYA_1751
Conserved hypothetical protein.
 
 
 0.972
CYA_1753
Conserved hypothetical protein.
 
   
 0.969
petG
Cytochrome b6-f complex, subunit V; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. PetG is required for either the stability or assembly of the cytochrome b6-f complex.
  
     0.700
CYA_2603
Conserved hypothetical protein; Identified by similarity to SP:P73883.
  
     0.620
CYA_2165
Conserved hypothetical protein; Identified by similarity to PIR:AC2310.
  
     0.608
CYA_0640
NAD(P)H dehydrogenase, subunit NdhF3 family; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01960.
  
 
 0.593
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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