STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1773ISSoc2, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766. (426 aa)    
Predicted Functional Partners:
CYA_1772
ISSoc2, resolvase; Identified by match to protein family HMM PF00239; match to protein family HMM PF00376.
      0.773
CYA_1774
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.773
CYA_1776
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CYA_0341
Conserved hypothetical protein; Identified by similarity to GB:BAB48108.1.
  
     0.748
CYA_1771
Hypothetical protein; Identified by Glimmer2; putative.
       0.603
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
       0.523
CYA_2248
Conserved hypothetical protein, truncation.
  
     0.515
CYA_1312
Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.
  
     0.509
rimI
Ribosomal-protein-alanine acetyltransferase; Identified by match to protein family HMM PF00583.
       0.443
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.