STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntcANitrogen-responsive regulatory protein; Identified by similarity to SP:Q05061; match to protein family HMM PF00027; match to protein family HMM PF00325. (224 aa)    
Predicted Functional Partners:
CYA_2046
Conserved hypothetical protein; Identified by similarity to PIR:AD1867.
  
 
 
 0.999
CYA_1491
Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.
  
     0.756
rpoC1
DNA-directed RNA polymerase, gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.703
glnA
Glutamine synthetase, type I; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.
   
  
 0.634
nirA
Ferredoxin-nitrite reductase; Identified by similarity to SP:Q51879; match to protein family HMM PF01077; match to protein family HMM PF03460; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
      
 0.623
glnB
Nitrogen regulatory protein P-II; Identified by similarity to SP:P80016; match to protein family HMM PF00543; Belongs to the P(II) protein family.
      
 0.615
amt
Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.
      
 0.598
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
  
 
 0.562
CYA_2405
Putative adenylate cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF00498.
 
 
 0.539
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
      
 0.526
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.