Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
CYA_1841FeoA domain protein; Identified by match to protein family HMM PF04023. (125 aa)    
Predicted Functional Partners:
CYA_1840
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
       0.678
CYA_1838
Conserved hypothetical protein; Identified by match to protein family HMM PF05082.
       0.559
nifW
Nitrogenase stabilizing/protective protein nifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
       0.559
CYA_1842
Hypothetical protein; Identified by Glimmer2; putative.
       0.532
nifX
Nitrogenase cofactor biosynthesis protein NifX; Identified by similarity to SP:P19078; match to protein family HMM PF02579; match to protein family HMM TIGR02663.
       0.429
CYA_1837
Conserved hypothetical protein; Identified by similarity to GB:AAC35200.1; match to protein family HMM PF03270.
       0.429
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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