CYA_1882 protein (Synechococcus sp. JA33Ab) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CYA_1882

Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF00805. (557 aa)

Predicted Functional Partners:

CYA_0212

0.842

CYA_2836

0.668

CYA_0594

0.552

CYA_2405

0.533

CYA_1393

0.512

CYA_2155

0.487

alaS

0.444

CYA_0483

0.442

CYA_2333

0.406

Your Current Organism:

Synechococcus sp. JA33Ab

NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYA_0212	CYA_1393	CYA_0212	CYA_1393	Identified by match to protein family HMM PF00481.	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.453
CYA_0212	CYA_1882	CYA_0212	CYA_1882	Identified by match to protein family HMM PF00481.	Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF00805.	0.842
CYA_0212	CYA_2333	CYA_0212	CYA_2333	Identified by match to protein family HMM PF00481.	Protein kinase domain/TPR repeat protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07719.	0.856
CYA_0212	CYA_2405	CYA_0212	CYA_2405	Identified by match to protein family HMM PF00481.	Putative adenylate cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF00498.	0.474
CYA_0483	CYA_1393	CYA_0483	CYA_1393	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.729
CYA_0483	CYA_1882	CYA_0483	CYA_1882	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF00805.	0.442
CYA_0483	CYA_2155	CYA_0483	CYA_2155	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.	0.907
CYA_0483	CYA_2333	CYA_0483	CYA_2333	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Protein kinase domain/TPR repeat protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07719.	0.717
CYA_0483	CYA_2405	CYA_0483	CYA_2405	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Putative adenylate cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF00498.	0.455
CYA_0483	CYA_2836	CYA_0483	CYA_2836	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.	0.971
CYA_0594	CYA_1393	CYA_0594	CYA_1393	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.803
CYA_0594	CYA_1882	CYA_0594	CYA_1882	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF00805.	0.552
CYA_1393	CYA_0212	CYA_1393	CYA_0212	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Identified by match to protein family HMM PF00481.	0.453
CYA_1393	CYA_0483	CYA_1393	CYA_0483	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.729
CYA_1393	CYA_0594	CYA_1393	CYA_0594	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.803
CYA_1393	CYA_1882	CYA_1393	CYA_1882	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF00805.	0.512
CYA_1393	CYA_2155	CYA_1393	CYA_2155	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.	0.705
CYA_1393	CYA_2333	CYA_1393	CYA_2333	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Protein kinase domain/TPR repeat protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07719.	0.845
CYA_1393	CYA_2405	CYA_1393	CYA_2405	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative adenylate cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF00498.	0.596
CYA_1393	CYA_2836	CYA_1393	CYA_2836	TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.	0.769

page 1 of 3

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About