Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_1970Conserved hypothetical protein. (153 aa)    
Predicted Functional Partners:
CYA_2175
Conserved hypothetical protein.
  
     0.658
psbV2
Putative cytochrome; Possible low-potential cytochrome c.
  
     0.633
CYA_1528
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF07992.
  
     0.590
psbV
Cytochrome c550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
  
     0.579
CYA_0868
Conserved hypothetical protein; Identified by similarity to PIR:AB2198.
  
     0.574
nrdJ
Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein-contatining; Identified by match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; match to protein family HMM TIGR02505.
  
     0.543
CYA_2795
Chloroplast envelope protein translocase (CEPT or Tic-Toc) family protein; Identified by match to protein family HMM PF04278.
  
     0.522
psbN
Photosystem II reaction center protein PsbN; May play a role in photosystem I and II biogenesis. Belongs to the PsbN family.
  
     0.516
CYA_0462
Conserved domain protein.
  
     0.509
psbU
Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.
  
     0.497
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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