Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_1984Conserved domain protein; Identified by similarity to PIR:AH2164. (243 aa)    
Predicted Functional Partners:
CYA_1494
Sensor histidine kinase; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518.
  
     0.771
CYA_2370
Conserved hypothetical protein.
  
     0.724
CYA_0198
pddD domain protein; Identified by similarity to SP:Q00517; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
     0.713
CYA_1341
Conserved hypothetical protein.
  
     0.713
CYA_2175
Conserved hypothetical protein.
  
     0.705
mreD
Rod shape-determining protein MreD; Identified by match to protein family HMM PF04093.
  
     0.704
CYA_0415
Conserved hypothetical protein; Catalyzes the decarbonylation of fatty aldehydes to alkanes.
  
     0.704
CYA_0414
Conserved hypothetical protein; Identified by similarity to GB:BAC91086.1.
  
     0.698
CYA_1391
Conserved hypothetical protein; Identified by similarity to GB:BAC07925.1.
  
     0.693
nrdJ
Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein-contatining; Identified by match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; match to protein family HMM TIGR02505.
  
     0.693
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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