Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
CYA_1987Conserved hypothetical protein; Identified by similarity to PIR:AC2428. (217 aa)    
Predicted Functional Partners:
CYA_1586
Conserved hypothetical protein.
  
     0.699
CYA_0059
Conserved hypothetical protein.
  
     0.652
psb27
Putative photosystem II protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.624
CYA_1536
Conserved domain protein.
  
     0.610
CYA_0748
Conserved hypothetical protein.
  
     0.592
CYA_0162
Conserved hypothetical protein; Identified by similarity to PIR:AB2066.
  
     0.586
CYA_1110
Identified by similarity to GB:BAC08389.1; match to protein family HMM PF00805.
  
     0.582
CYA_2482
Conserved hypothetical protein.
  
     0.580
CYA_0839
Conserved hypothetical protein; Identified by similarity to GB:BAD79475.1.
  
     0.564
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.561
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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