STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_1989Sensor histidine kinase; Identified by match to protein family HMM PF02518. (161 aa)    
Predicted Functional Partners:
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
  
  
 0.993
CYA_0954
Identified by match to protein family HMM PF01740.
 
 
 0.940
CYA_2105
Anti-anti-sigma factor; Identified by similarity to SP:Q9WVX8; match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.888
CYA_0902
Identified by match to protein family HMM PF01740.
  
 
 0.842
CYA_0978
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.
 
 
 0.835
CYA_0100
GAF/SpoIIE domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF07228.
 
 
 0.814
CYA_2155
Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.
  
  
 0.812
CYA_0597
RNA polymerase sigma factor, group 3; Identified by similarity to GB:CAA71068.1; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR01199; Belongs to the sigma-70 factor family.
  
 
 0.736
CYA_0483
GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
 
 0.667
CYA_0663
ICE-like protease (caspase) p20 domain protein; Identified by match to protein family HMM PF00656; match to protein family HMM TIGR01409.
  
     0.644
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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