STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2004Conserved hypothetical protein; Identified by similarity to GB:BAC09915.1. (272 aa)    
Predicted Functional Partners:
CYA_0570
Conserved hypothetical protein; Identified by similarity to GB:BAC09020.1.
  
     0.743
CYA_1833
Identified by match to protein family HMM PF06967.
  
     0.734
CYA_1388
Conserved hypothetical protein.
  
     0.730
CYA_0454
Identified by match to protein family HMM TIGR02652.
  
     0.719
CYA_0722
Conserved hypothetical protein; Identified by similarity to GB:BAC09253.1.
  
     0.716
CYA_0898
Identified by match to protein family HMM PF06967.
  
     0.712
CYA_2805
Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065.
  
    0.693
CYA_1586
Conserved hypothetical protein.
  
     0.691
CYA_2661
Conserved hypothetical protein.
  
     0.680
CYA_0649
Putative pilus biogenesis protein; Identified by similarity to GB:AAC36156.1.
  
     0.677
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.