Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_2028Conserved domain protein. (130 aa)    
Predicted Functional Partners:
CYA_2027
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
     0.688
CYA_2211
Conserved hypothetical protein.
  
     0.680
CYA_1830
Conserved hypothetical protein.
  
     0.605
CYA_2463
Conserved hypothetical protein; Identified by similarity to PIR:AB1982.
  
     0.600
CYA_2312
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.593
CYA_0367
Identified by match to protein family HMM PF00903.
  
     0.586
CYA_1719
Conserved hypothetical protein; Identified by similarity to PIR:AC2156; match to protein family HMM PF02656.
  
     0.574
CYA_2468
Conserved hypothetical protein.
  
     0.573
CYA_0123
Phycobilisome degradation family protein.
  
     0.556
CYA_1413
Conserved hypothetical protein.
  
     0.544
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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