Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_2033Iron chelate uptake ABC transporter (FeCT) family, permease protein; Identified by similarity to SP:P15029; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (347 aa)    
Predicted Functional Partners:
CYA_2032
Iron chelate ABC transporter (FeCT) family, ATP-binding protein; Identified by similarity to SP:P15031; match to protein family HMM PF00005.
 
 
 0.998
CYA_2029
Iron chelate ABC transporter (FeCT) family, substrate-binding protein; Identified by match to protein family HMM PF01497.
 
 
 0.966
CYA_2031
Transporter, TonB-dependent heme/hemoglobin receptor family; Identified by similarity to GB:AAC27029.1; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786.
 
  
 0.849
CYA_1855
Metal chelate ABC transporter, metal chelate-binding protein; Identified by match to protein family HMM PF01497.
 
 
 0.846
CYA_2030
TonB family protein; Identified by similarity to GB:AAF04082.1; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
     
 0.615
CYA_1893
Peptide/opine/nickel ABC transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
      
 0.554
gltS
Ferredoxin-dependent glutamate synthase; Identified by similarity to SP:P55038; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
      
 0.544
cobA/hemD
uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase; Identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.
     
 0.502
CYA_1108
Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
   
 0.423
ribAB
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.
     
 0.408
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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