CYA_2048 protein (Synechococcus sp. JA33Ab) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CYA_2048

ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (247 aa)

Predicted Functional Partners:

macB

0.991

CYA_0194

0.801

pstB-2

0.681

devC

0.681

CYA_2049

0.647

CYA_1620

0.646

CYA_1609

0.556

CYA_2047

0.545

CYA_2187

0.526

CYA_0311

0.523

Your Current Organism:

Synechococcus sp. JA33Ab

NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYA_0194	CYA_0311	CYA_0194	CYA_0311	Heavy metal ABC transporter (HMT) family, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.922
CYA_0194	CYA_2048	CYA_0194	CYA_2048	Heavy metal ABC transporter (HMT) family, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.801
CYA_0194	pstB-2	CYA_0194	CYA_1735	Heavy metal ABC transporter (HMT) family, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.899
CYA_0311	CYA_0194	CYA_0311	CYA_0194	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Heavy metal ABC transporter (HMT) family, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.922
CYA_0311	CYA_2048	CYA_0311	CYA_2048	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.523
CYA_0311	pstB-2	CYA_0311	CYA_1735	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.871
CYA_1609	CYA_2048	CYA_1609	CYA_2048	Putative cobalt ABC transporter (CoT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.556
CYA_1620	CYA_2048	CYA_1620	CYA_2048	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01167; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.646
CYA_1620	devC	CYA_1620	CYA_1878	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01167; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Probable glycolipid ABC exporter (DevE) family, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	0.602
CYA_1620	macB	CYA_1620	CYA_1621	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01167; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Macrolide ABC transporter, permease protein; Identified by similarity to SP:P75831; match to protein family HMM PF02687.	0.969
CYA_2047	CYA_2048	CYA_2047	CYA_2048	Conserved hypothetical protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.545
CYA_2047	CYA_2049	CYA_2047	CYA_2049	Conserved hypothetical protein.	Identified by match to protein family HMM PF00753.	0.625
CYA_2048	CYA_0194	CYA_2048	CYA_0194	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Heavy metal ABC transporter (HMT) family, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.801
CYA_2048	CYA_0311	CYA_2048	CYA_0311	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.523
CYA_2048	CYA_1609	CYA_2048	CYA_1609	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative cobalt ABC transporter (CoT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.556
CYA_2048	CYA_1620	CYA_2048	CYA_1620	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01167; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.646
CYA_2048	CYA_2047	CYA_2048	CYA_2047	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Conserved hypothetical protein.	0.545
CYA_2048	CYA_2049	CYA_2048	CYA_2049	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Identified by match to protein family HMM PF00753.	0.647
CYA_2048	CYA_2187	CYA_2048	CYA_2187	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.526
CYA_2048	devC	CYA_2048	CYA_1878	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Probable glycolipid ABC exporter (DevE) family, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	0.681

page 1 of 2

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About