STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2086Conserved hypothetical protein; Identified by similarity to GB:BAC07807.1. (253 aa)    
Predicted Functional Partners:
CYA_2087
Conserved hypothetical protein; Identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; Belongs to the MlaE permease family.
       0.773
CYA_2085
Conserved hypothetical protein; Identified by similarity to GB:BAC90914.1.
       0.552
CYA_1016
Conserved hypothetical protein; Identified by similarity to GB:BAC08280.1.
  
     0.534
CYA_0089
Conserved hypothetical protein; Identified by similarity to GB:BAC92187.1.
  
     0.510
CYA_1793
Conserved hypothetical protein.
  
     0.501
CYA_1509
Putative inorganic carbon transporter/0-antigen polymerase (ICT/OAP) family protein; Identified by match to protein family HMM PF04932.
  
     0.498
CYA_2000
Conserved hypothetical protein.
  
     0.474
CYA_0165
Conserved hypothetical protein; Identified by similarity to GB:BAC09647.1; match to protein family HMM PF01935.
  
     0.472
cheW
Chemotaxis protein cheW; Identified by similarity to SP:P07365; match to protein family HMM PF01584.
  
     0.461
CYA_0723
Conserved hypothetical protein.
  
     0.446
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.