STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2089Collagen alpha 1(III) chain. (149 aa)    
Predicted Functional Partners:
CYA_1317
Conserved hypothetical protein.
  
     0.609
CYA_2237
Conserved hypothetical protein; Identified by similarity to GB:BAC07624.1.
  
     0.609
CYA_0102
Conserved hypothetical protein.
  
     0.584
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.573
CYA_1707
Conserved hypothetical protein.
  
     0.565
CYA_2090
Hypothetical protein; Identified by Glimmer2; putative.
       0.555
CYA_2774
Putative cyclase/dehydrase; Identified by match to protein family HMM PF03364.
  
     0.534
CYA_0805
Conserved hypothetical protein; Identified by similarity to PIR:AD1913.
  
     0.528
CYA_0249
Conserved hypothetical protein.
  
     0.498
CYA_0564
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.497
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.