CYA_2109 protein (Synechococcus sp. JA33Ab) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CYA_2109

Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409. (348 aa)

Predicted Functional Partners:

CYA_2111

0.989

CYA_2783

0.965

CYA_2794

0.950

CYA_2782

0.927

CYA_2110

0.773

CYA_2108

0.499

CYA_2608

0.443

CYA_1026

0.403

Your Current Organism:

Synechococcus sp. JA33Ab

NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CYA_1026	CYA_2109	Transporter, lead (Pb2+) uptake porter (PbrT) family; Identified by similarity to GB:CAC28871.1; match to protein family HMM PF03239.	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	0.403
CYA_1026	CYA_2782	Transporter, lead (Pb2+) uptake porter (PbrT) family; Identified by similarity to GB:CAC28871.1; match to protein family HMM PF03239.	Brachyspira iron ABC transporter (BIT) family, iron-binding protein; Identified by match to protein family HMM PF01547.	0.403
CYA_2108	CYA_2109	Hypothetical protein; Identified by Glimmer2; putative.	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	0.499
CYA_2108	CYA_2110	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.499
CYA_2109	CYA_1026	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	Transporter, lead (Pb2+) uptake porter (PbrT) family; Identified by similarity to GB:CAC28871.1; match to protein family HMM PF03239.	0.403
CYA_2109	CYA_2108	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	Hypothetical protein; Identified by Glimmer2; putative.	0.499
CYA_2109	CYA_2110	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	Hypothetical protein; Identified by Glimmer2; putative.	0.773
CYA_2109	CYA_2111	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.	0.989
CYA_2109	CYA_2608	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	Putative iron-regulated protein A; Identified by similarity to SP:P12608.	0.443
CYA_2109	CYA_2782	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	Brachyspira iron ABC transporter (BIT) family, iron-binding protein; Identified by match to protein family HMM PF01547.	0.927
CYA_2109	CYA_2783	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.	0.965
CYA_2109	CYA_2794	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.950
CYA_2110	CYA_2108	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.499
CYA_2110	CYA_2109	Hypothetical protein; Identified by Glimmer2; putative.	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	0.773
CYA_2110	CYA_2111	Hypothetical protein; Identified by Glimmer2; putative.	Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.	0.463
CYA_2111	CYA_2109	Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.	Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.	0.989
CYA_2111	CYA_2110	Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.	Hypothetical protein; Identified by Glimmer2; putative.	0.463
CYA_2111	CYA_2782	Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.	Brachyspira iron ABC transporter (BIT) family, iron-binding protein; Identified by match to protein family HMM PF01547.	0.935
CYA_2111	CYA_2783	Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.	Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.	0.924
CYA_2111	CYA_2794	Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.	Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.957

page 1 of 2

Server load: medium (72%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2025

Credits

Access

Info

About