Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_2142Putative aspartate ammonia-lyase; Identified by similarity to SP:P26899; match to protein family HMM PF00206. (461 aa)    
Predicted Functional Partners:
CYA_0688
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01812.
 
 0.986
CYA_0662
Malate dehydrogenase (oxaloacetate-decarboxylating); Identified by similarity to SP:P16468; match to protein family HMM PF00390; match to protein family HMM PF01842; match to protein family HMM PF03949.
  
 
 0.920
CYA_1739
2-methylcitrate synthase/citrate synthase II; Identified by match to protein family HMM PF00285; match to protein family HMM TIGR01800; Belongs to the citrate synthase family.
     
 0.826
argH
Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.
     
 0.816
aspC
Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.
     
 0.804
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
  0.800
CYA_2435
Identified by match to protein family HMM PF03069.
     
  0.800
CYA_2143
Hypothetical protein; Identified by Glimmer2; putative.
       0.658
CYA_2141
Sugar transporter, glycoside-pentoside-hexuronide (GPH):cation symporter family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792.
       0.551
argD
Acetylornithine transaminase; Identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
    
 0.544
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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