STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2149Hypothetical protein; Identified by Glimmer2; putative. (58 aa)    
Predicted Functional Partners:
CYA_2148
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CYA_2150
Fasciclin domain protein; Identified by match to protein family HMM PF02469.
       0.601
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by match to protein family HMM PF05137.
  
     0.581
rca
Ribulose bisphosphate carboxylase/oxygenase activase; Identified by similarity to SP:Q06721; match to protein family HMM PF00004; match to protein family HMM PF00101.
  
     0.499
CYA_1388
Conserved hypothetical protein.
  
     0.450
CYA_0995
Conserved hypothetical protein.
  
     0.444
CYA_2211
Conserved hypothetical protein.
  
     0.443
CYA_2147
GTP-binding domain protein; Identified by match to protein family HMM PF01926.
       0.436
CYA_1145
Conserved hypothetical protein.
  
     0.417
psbV2
Putative cytochrome; Possible low-potential cytochrome c.
  
     0.412
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.