Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_2157Conserved domain protein; Identified by similarity to PIR:S76707. (302 aa)    
Predicted Functional Partners:
CYA_2155
Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 0.942
CYA_2742
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
  
 
 0.907
CYA_2160
CheW domain protein; Identified by match to protein family HMM PF01584.
 
 
 0.880
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
  
 
 0.846
CYA_2159
Hypothetical protein; Identified by Glimmer2; putative.
       0.768
CYA_2162
Response regulator; Identified by match to protein family HMM PF00072.
 
   0.660
CYA_1830
Conserved hypothetical protein.
  
     0.626
CYA_2771
Conserved hypothetical protein; Identified by similarity to PIR:AD1978.
  
     0.552
CYA_1075
Conserved hypothetical protein; Identified by similarity to GB:BAD79760.1.
  
     0.522
CYA_2463
Conserved hypothetical protein; Identified by similarity to PIR:AB1982.
  
     0.521
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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