Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2175Conserved hypothetical protein. (236 aa)    
Predicted Functional Partners:
CYA_2174
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.773
CYA_1984
Conserved domain protein; Identified by similarity to PIR:AH2164.
  
     0.705
psbV2
Putative cytochrome; Possible low-potential cytochrome c.
  
     0.687
CYA_1970
Conserved hypothetical protein.
  
     0.658
CYA_0040
Conserved hypothetical protein.
  
     0.601
nrdJ
Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein-contatining; Identified by match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; match to protein family HMM TIGR02505.
  
     0.599
CYA_1046
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.567
CYA_2370
Conserved hypothetical protein.
  
     0.545
CYA_1341
Conserved hypothetical protein.
  
     0.543
CYA_2488
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.543
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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